Changelog 0.0

DepMapAnalysis 0.0.1 (2020-10-02)

Initial release.

DepMapAnalysis 0.0.2 (2020-10-02)

New functions

  • plotGeneEffect: Plot effect of gene knockdown as a boxplot or density plot.

Major changes

  • Achilles object now requires slotting of common essential genes from DepMap. These are now imported automatically in the main Achilles() call.

DepMapAnalysis 0.0.3 (2020-10-07)

Minor changes

  • Achilles: Gene synonyms are now fetched automatically, based on the new makeGRangesFromEnsembl update in basejump.
  • Simplified internal BiocFileCache handling, using new cacheURL function defined in pipette package.

DepMapAnalysis 0.0.4 (2021-02-10)

Major changes

  • Added support for 21Q1, 20Q4 v2, and 20Q4 releases.
  • Switched Achilles object to inherit from SummarizedExperiment instead of RangedSummarizedExperiment.
  • Gene metadata now comes from NCBI FTP server.
  • DEMETER2 class objects now support colData and rowData.

DepMapAnalysis 0.0.5 (2021-02-25)

Major changes

  • Improved metadata support for some CCLE functions, returning as SummarizedExperiment instead of DataFrame, when possible.

DepMapAnalysis 0.0.6 (2021-03-12)

Minor changes

  • Updated basejump dependencies, and removed now unnecessary stringr import.