Usage
selectCells(object, ...)
# S4 method for Cellosaurus
selectCells(object, ...)
Arguments
- object
Object.
- ...
Named key value pairs that map to cell line metadata defined in colData
.
Value
Modified object, subset to only contain matching cell lines.
Details
Only exact matching is currently supported.
Supported keys
"category"
"isCancer"
"isContaminated"
"isProblematic"
"ncbiTaxonomyId"
"ncitDiseaseId"
"ncitDiseaseName"
"oncotreeCode"
"oncotreeMainType"
"oncotreeName"
"oncotreeTissue"
"organism"
"sexOfCell"
See also
Cellosaurus package.
DepMapAnalysis package.
Examples
data(cello)
## Cellosaurus ====
object <- cello
print(dim(object))
#> [1] 10 36
subset <- selectCells(
object = object,
category = "Cancer cell line",
organism = "Homo sapiens",
sexOfCell = "Female"
)
print(dim(subset))
#> [1] 3 36