Exclude contaminated cells

Exclude contaminated cells

Usage

excludeContaminatedCells(object, ...)

# S4 method for Cellosaurus
excludeContaminatedCells(object)

Arguments

object

Object.

...

Additional arguments.

Value

Modified object, with contaminated cells excluded (removed).

Details

excludeContaminatedCells only filters based on "Problematic cell line: Contaminated" metadata in cell line comments. This is less stringent than excludeProblematicCells and intentionaly keeps cell lines that are misidentified but not contaminated.

Note

Updated 2023-09-12.

See also

• Cellosaurus package.

Examples

data(cello)

## Cellosaurus ====
object <- cello
print(dim(object))
#> [1] 10 36
object <- excludeContaminatedCells(object)
print(dim(object))
#> [1] 10 36