Plot ribosomal RNA (rRNA) mapping rateSource:
Clean, high-quality samples should have an rRNA mapping rate below 10%. Higher rates are likely indicative of the polyA enrichment or ribo depletion protocol not having removed all ribosomal RNA (rRNA) transcripts. This will reduce the number of biologically meaningful reads in the experiment and is best avoided.
character. Groups of interest to use for visualization. Corresponds to factors describing the columns of the object.
numeric(1). Threshold limit.
list. ggplot2 labels. See
logical(1). Flip x and y axes. Recommended for plots containing many samples.
data(bcb) ## bcbioRNASeq ==== plotRRNAMappingRate(bcb)