Please follow all recommended guidelines defined in the basejump package.
Check that all templates render correctly.
://github.com/bcbio/bcbio_rnaseq_output_example.git
git clone https
cd bcbio_rnaseq_output_example-e 'testthat::test_file("test_reports.R")' Rscript
Ensure that all expected HTML files are created inside the reports/
directory, and that all figures and tables look correct.