Update outdated dependencies

Supports Bioconductor, CRAN, and GitHub packages via BiocManager.

updateDeps(
  pkg = ".",
  type = c("Depends", "Imports", "LinkingTo", "Suggests", "Enhances")
)

Arguments

pkg	`character(1)`. Package path. Must contain a `DESCRIPTION` file.
type	`character`. Dependency type. See `utils::install.packages()` for details.

BiocManager::install() call if packages need an update.

This is used by r-cmd-check for continuous integration (CI) testing.

Updated 2020-10-20.