basejump 0.14.0 (2021-02-06)

Reworked package to simply inherit and reexport functions from other Acid Genomics packages, rather than defining any code directly here.

Major changes

  • camelCase and upperCamelCase now default to strict = TRUE, reflecting change implemented in syntactic v0.4.4 release.

Minor changes

  • Consolidated S4 generic imports into AcidGenerics, removing import dependency on BiocGenerics.
  • Removed reexport of mapUCSCBuildToEnsembl, defined in AcidGenomes.

basejump 0.14.1 (2021-02-08)

Minor changes

  • Now re-exporting some other useful functions from SummarizedExperiment and SingleCellExperiment, which are defined in AcidExperiment and AcidSingleCell respectively.

basejump 0.14.2 (2021-02-09)

New functions

  • Added more reexports from base/recommended R packages, including grDevices, grid, methods, stats, and utils.

basejump 0.14.3 (2021-02-10)

New functions

  • Reexporting some functions used downstream in DESeqAnalysis: capture.output, cbind, getS3method, model.matrix, rbind, and relevel.

basejump 0.14.4 (2021-02-11)

Minor changes

  • Now reexporting additional classes defined in IRanges via pipette: CharacterList, FactorList, IntegerList, LogicalList, NumericList, and RleList.

basejump 0.14.5 (2021-02-11)

Minor changes

  • Reworked the NAMESPACE to reduce the number of imported packages.

basejump 0.14.6 (2021-02-12)

Minor changes

  • Now reexporting end, start, and width from AcidGenerics.

basejump 0.14.7 (2021-02-12)

Minor changes

  • Migrated reexports of IRanges from pipette to AcidGenerics.

basejump 0.14.8 (2021-02-13)

Minor changes

  • Added more Bioconductor reexports from BiocGenerics and S4Vectors.
  • Updated dependency versions.

basejump 0.14.9 (2021-02-17)

Minor changes

  • Reexporting formula and untar, which are used in WormBase package.
  • Ensure grDevices, stats, and utils reexports inherit from AcidBase.
  • Updated dependency version cutoffs.

basejump 0.14.10 (2021-02-21)

Minor changes

  • Now reexporting mapToDataFrame and rbindToDataFrame from AcidPlyr. Note that unlistToDataFrame is now deprecated, in favor of mapToDataFrame, and will be removed in a future release.

basejump 0.14.20 (2021-08-04)

Minor changes

  • Added simpleClass reexport from AcidBase package update.
  • Updated dependency package version cutoffs.

basejump 0.14.21 (2021-08-09)

Minor changes

  • Updated dependency version cutoffs.
  • Removed mapEnsemblBuildToUCSC and mapUCSCBuildToEnsembl, which are no longer exported in the AcidGenomes package.