NCBI-to-Ensembl gene identifier mappings

Usage

NcbiToEnsembl(object, ...)

# S4 method for Hgnc
NcbiToEnsembl(object)

# S4 method for Mgi
NcbiToEnsembl(object)

# S4 method for integer
NcbiToEnsembl(object, organism)

Arguments

object: Object.
organism: character(1). Full Latin organism name (e.g. "Homo sapiens").
...: Additional arguments.

Value

NcbiToEnsembl.

Note

Updated 2023-11-28.

Examples

## integer ====
x <- NcbiToEnsembl(object = c(2L, 1L), organism = "Homo sapiens")
#> → Matching 2 identifiers against HGNC database.
#> → Importing HGNC complete set.
#> → Importing /Users/mike/.cache/R/AcidGenomes/BiocFileCache/886a796ea9b4_hgnc_complete_set.txt using base::`readLines()`.
#> → Importing text connection with base::`read.table()`.
print(x)
#> NcbiToEnsembl with 2 rows and 2 columns
#>   ncbiGeneId   ensemblGeneId
#>    <integer>     <character>
#> 2          2 ENSG00000175899
#> 1          1 ENSG00000121410