Import HGNC complete set metadata

HGNC()

Value

HGNC.

Note

Updated 2021-03-19.

See also

  • https://www.genenames.org/

  • https://www.genenames.org/download/statistics-and-files/

Examples

object <- HGNC()
#> → Importing HGNC complete set.
#> → Importing af134762d6b3_hgnc_complete_set.txt at /opt/koopa/opt/r/cache/AcidGenomes using data.table::`fread()`.
print(object)
#> HGNC with 42422 rows and 52 columns #> hgncId symbol name locusGroup #> <integer> <character> <character> <character> #> 5 5 A1BG alpha-1-B glycoprotein protein-coding gene #> 7 7 A2M alpha-2-macroglobulin protein-coding gene #> 8 8 A2MP1 alpha-2-macroglobuli.. pseudogene #> 15 15 NATP N-acetyltransferase .. pseudogene #> 16 16 SERPINA3 serpin family A memb.. protein-coding gene #> ... ... ... ... ... #> 55453 55453 TROAP-AS1 TROAP and PRPH antis.. non-coding RNA #> 55454 55454 SLC38A2-AS1 SLC38A2 antisense RN.. non-coding RNA #> 55455 55455 CD63-AS1 CD63 antisense RNA 1 non-coding RNA #> 55456 55456 PPP1R12A-AS2 PPP1R12A antisense R.. non-coding RNA #> 55457 55457 R3HDM2-DT R3HDM2 divergent tra.. non-coding RNA #> locusType status location locationSortable #> <character> <character> <character> <character> #> 5 gene with protein pr.. Approved 19q13.43 19q13.43 #> 7 gene with protein pr.. Approved 12p13.31 12p13.31 #> 8 pseudogene Approved 12p13.31 12p13.31 #> 15 pseudogene Approved 8p22 08p22 #> 16 gene with protein pr.. Approved 14q32.13 14q32.13 #> ... ... ... ... ... #> 55453 RNA, long non-coding Approved 12q13.12 12q13.12 #> 55454 RNA, long non-coding Approved 12q13.11 12q13.11 #> 55455 RNA, long non-coding Approved 12q13.2 12q13.2 #> 55456 RNA, long non-coding Approved 12q21.2 12q21.2 #> 55457 RNA, long non-coding Approved 12q13.3 12q13.3 #> aliasSymbol aliasName prevSymbol #> <CharacterList> <CharacterList> <CharacterList> #> 5 NA NA NA #> 7 FWP007,S863-7,CPAMD5 NA NA #> 8 NA NA A2MP #> 15 NATP1 NA AACP #> 16 ACT NA AACT #> ... ... ... ... #> 55453 NA NA NA #> 55454 NA NA NA #> 55455 NA NA NA #> 55456 NA NA NA #> 55457 NA NA NA #> prevName #> <CharacterList> #> 5 NA #> 7 NA #> 8 alpha-2-macroglobuli.. #> 15 arylamide acetylase .. #> 16 alpha-1-antichymotry..,serine (or cysteine)..,serpin peptidase inh.. #> ... ... #> 55453 NA #> 55454 NA #> 55455 NA #> 55456 NA #> 55457 NA #> geneFamily geneFamilyId dateApprovedReserved #> <CharacterList> <CharacterList> <IDate> #> 5 Immunoglobulin like .. 594 1989-06-30 #> 7 C3 and PZP like, alp.. 1234 1986-01-01 #> 8 NA NA 1991-09-12 #> 15 Arylamine N-acetyltr.. 1133 1992-07-09 #> 16 Serpin peptidase inh.. 739 2001-06-22 #> ... ... ... ... #> 55453 Antisense RNAs 1987 2021-01-20 #> 55454 Antisense RNAs 1987 2021-01-20 #> 55455 Antisense RNAs 1987 2021-01-20 #> 55456 Antisense RNAs 1987 2021-01-20 #> 55457 Divergent transcripts 1990 2021-01-20 #> dateSymbolChanged dateNameChanged dateModified entrezId ensemblGeneId #> <IDate> <IDate> <IDate> <integer> <character> #> 5 NA NA 2020-09-17 1 ENSG00000121410 #> 7 NA NA 2020-09-17 2 ENSG00000175899 #> 8 2010-02-24 2010-02-24 2016-08-22 3 ENSG00000256069 #> 15 2013-08-22 2013-08-22 2014-11-18 11 ENSG00000253937 #> 16 NA 2016-04-06 2020-10-29 12 ENSG00000196136 #> ... ... ... ... ... ... #> 55453 NA 2021-01-20 2021-01-20 101927267 ENSG00000258334 #> 55454 NA NA 2021-01-20 102723757 ENSG00000258096 #> 55455 NA NA 2021-01-20 105369779 ENSG00000258056 #> 55456 2021-01-20 2021-01-20 2021-01-20 105369864 ENSG00000258048 #> 55457 NA NA 2021-01-20 NA ENSG00000258001 #> vegaId ucscId ena refseqAccession #> <character> <character> <CharacterList> <CharacterList> #> 5 OTTHUMG00000183507 uc002qsd.5 NA NM_130786 #> 7 OTTHUMG00000150267 uc001qvk.2 BX647329,X68728,M11313 NM_000014 #> 8 OTTHUMG00000168334 NA M24415 NG_001067 #> 15 OTTHUMG00000163710 NA X17060 NG_004857 #> 16 OTTHUMG00000029851 uc001yds.4 K01500 NM_001085 #> ... ... ... ... ... #> 55453 NA NA NA NR_120449 #> 55454 NA NA NA XR_001749103 #> 55455 NA NA NA XR_944987 #> 55456 NA NA NA XR_945137 #> 55457 NA NA NA NA #> ccdsId uniprotIds pubmedId #> <CharacterList> <CharacterList> <CharacterList> #> 5 CCDS12976 P04217 2591067 #> 7 CCDS44827 P01023 2408344,9697696 #> 8 NA NA 2478422 #> 15 NA NA 2340091,9284941 #> 16 CCDS32150 P01011 3260956,24172014 #> ... ... ... ... #> 55453 NA NA NA #> 55454 NA NA NA #> 55455 NA NA NA #> 55456 NA NA NA #> 55457 NA NA NA #> mgdId rgdId lsdb #> <CharacterList> <CharacterList> <CharacterList> #> 5 MGI:2152878 RGD:69417 NA #> 7 MGI:2449119 RGD:2004 NA #> 8 NA NA NA #> 15 NA NA NA #> 16 MGI:102848,MGI:105045,MGI:105046,... RGD:735068 NA #> ... ... ... ... #> 55453 NA NA NA #> 55454 NA NA NA #> 55455 NA NA NA #> 55456 NA NA NA #> 55457 NA NA NA #> cosmic omimId mirbase homeodb snornabase #> <character> <CharacterList> <character> <integer> <character> #> 5 NA 138670 NA NA NA #> 7 NA 103950 NA NA NA #> 8 NA NA NA NA NA #> 15 NA NA NA NA NA #> 16 NA 107280 NA NA NA #> ... ... ... ... ... ... #> 55453 NA NA NA NA NA #> 55454 NA NA NA NA NA #> 55455 NA NA NA NA NA #> 55456 NA NA NA NA NA #> 55457 NA NA NA NA NA #> bioparadigmsSlc orphanet pseudogeneOrg hordeId merops #> <character> <integer> <character> <character> <character> #> 5 NA NA NA NA I43.950 #> 7 NA NA NA NA I39.001 #> 8 NA NA PGOHUM00000291221 NA NA #> 15 NA NA PGOHUM00000260428 NA NA #> 16 NA 200946 NA NA I04.002 #> ... ... ... ... ... ... #> 55453 NA NA NA NA NA #> 55454 NA NA NA NA NA #> 55455 NA NA NA NA NA #> 55456 NA NA NA NA NA #> 55457 NA NA NA NA NA #> imgt iuphar kznfGeneCatalog mamitTrnadb cd #> <character> <character> <integer> <integer> <character> #> 5 NA NA NA NA NA #> 7 NA NA NA NA NA #> 8 NA NA NA NA NA #> 15 NA NA NA NA NA #> 16 NA NA NA NA NA #> ... ... ... ... ... ... #> 55453 NA NA NA NA NA #> 55454 NA NA NA NA NA #> 55455 NA NA NA NA NA #> 55456 NA NA NA NA NA #> 55457 NA NA NA NA NA #> lncrnadb enzymeId intermediateFilamentDb rnaCentralIds #> <character> <CharacterList> <character> <logical> #> 5 NA NA NA NA #> 7 NA NA NA NA #> 8 NA NA NA NA #> 15 NA NA NA NA #> 16 NA NA NA NA #> ... ... ... ... ... #> 55453 NA NA NA NA #> 55454 NA NA NA NA #> 55455 NA NA NA NA #> 55456 NA NA NA NA #> 55457 NA NA NA NA #> lncipedia gtrnadb agr #> <character> <character> <character> #> 5 NA NA HGNC:5 #> 7 NA NA HGNC:7 #> 8 NA NA HGNC:8 #> 15 NA NA HGNC:15 #> 16 NA NA HGNC:16 #> ... ... ... ... #> 55453 NA NA NA #> 55454 NA NA NA #> 55455 NA NA NA #> 55456 NA NA NA #> 55457 NA NA NA