Ensembl-to-NCBI gene identifier mappings

Usage

EnsemblToNcbi(object, ...)

# S4 method for EnsemblGenes
EnsemblToNcbi(object, useCurated = TRUE)

# S4 method for GencodeGenes
EnsemblToNcbi(object, useCurated = TRUE)

# S4 method for Hgnc
EnsemblToNcbi(object)

# S4 method for Mgi
EnsemblToNcbi(object)

# S4 method for character
EnsemblToNcbi(object, organism = NULL)

Arguments

object: Object.
useCurated: logical(1). Applies to Homo sapiens and Mus musculus only currently. Use current curated mappings from HGNC (human) or MGI (mouse).
organism: character(1). Full Latin organism name (e.g. "Homo sapiens").
...: Additional arguments.

Value

EnsemblToNcbi.

Note

Updated 2023-11-28.

Examples

## character ====
x <- EnsemblToNcbi(
    object = c("ENSG00000000005.6", "ENSG00000000003.16"),
    organism = "Homo sapiens"
)
#> → Matching 2 identifiers against HGNC database.
#> → Importing HGNC complete set.
#> → Importing /Users/mike/.cache/R/AcidGenomes/BiocFileCache/886a796ea9b4_hgnc_complete_set.txt using base::`readLines()`.
#> → Importing text connection with base::`read.table()`.
print(x)
#> EnsemblToNcbi with 2 rows and 2 columns
#>                      ensemblGeneId ncbiGeneId
#>                        <character>  <integer>
#> ENSG00000000005.6  ENSG00000000005      64102
#> ENSG00000000003.16 ENSG00000000003       7105