Trimmed mean of M-values — tmm • AcidGenerics

TMM normalization is recommended for RNA-seq data generally when the majority of genes are not differentially expressed.

Usage

tmm(object, ...)

Arguments

object: Object.
...: Additional arguments.

Value

matrix.

Note

Only recommended for gene-level counts.

References

Robinson and Oshlack (2010).

See also

edgeR::calcNormFactors().
edgeR::cpm().

Examples

showMethods("tmm")
#> Function: tmm (package AcidGenerics)
#> <No methods>
#>