Gene-to-symbol mappings

Usage

GeneToSymbol(object, ...)

# S4 method for SummarizedExperiment
GeneToSymbol(object, ...)

Arguments

object: Object.
...: Additional arguments.

Value

GeneToSymbol.

Details

For some organisms, gene identifiers and gene names do not map 1:1 (e.g. Homo sapiens and Mus musculus). Refer to the format argument here in the documentation for approaches that deal with this issue.

Note

Updated 2021-08-09.

Examples

data(RangedSummarizedExperiment, package = "AcidTest")

## SummarizedExperiment ====
object <- RangedSummarizedExperiment
x <- GeneToSymbol(object)
print(x)
#> GeneToSymbol with 500 rows and 2 columns
#>                     geneId    geneName
#>                <character> <character>
#> gene001 ENSG00000000003.15      TSPAN6
#> gene002  ENSG00000000005.6        TNMD
#> gene003 ENSG00000000419.12        DPM1
#> gene004 ENSG00000000457.14       SCYL3
#> gene005 ENSG00000000460.17    C1orf112
#> ...                    ...         ...
#> gene496 ENSG00000032742.17       IFT88
#> gene497 ENSG00000033011.13        ALG1
#> gene498 ENSG00000033030.15      ZCCHC8
#> gene499  ENSG00000033050.9       ABCF2
#> gene500 ENSG00000033100.16       CHPF2