Toolkit to extend the functionality of SummarizedExperiment.
Requirements: R >= 4.0, Bioconductor >= 3.12.
if (!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
install.packages(
pkgs = "AcidExperiment",
repos = c(
"https://r.acidgenomics.com",
BiocManager::repositories()
)
)
image="acidgenomics/r-acidexperiment"
workdir="/mnt/work"
docker pull "$image"
docker run -it \
--volume="${PWD}:${workdir}" \
--workdir="$workdir" \
"$image" \
R