Interative R command line interface toolkit for Acid Genomics packages.

Installation

This is an R package.

install.packages(
    pkgs = "AcidCLI",
    repos = c(
        "https://r.acidgenomics.com",
        getOption("repos")
    )
)

Docker method

image="acidgenomics/r-acidcli"
workdir="/mnt/work"
docker pull "$image"
docker run -it \
    --volume="${PWD}:${workdir}" \
    --workdir="$workdir" \
    "$image" \
    R