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Principal component analysis plot

Source: R/AllGenerics.R, R/plotPca-methods.R
plotPca.Rd

Principal component analysis plot

Usage

plotPca(object, ...)

# S4 method for class 'DESeqAnalysis'
plotPca(object, ...)

Arguments

object

Object.

...

Additional arguments.

Value

ggplot.

Details

Passes to SummarizedExperiment defined in AcidPlots package.

Functions

  • plotPca(DESeqAnalysis): Extracts DESeqTransform, converts to RangedSummarizedExperiment, and passes to method defined in AcidPlots.

Note

Updated 2022-09-27.

See also

Examples

data(deseq)

## DESeqAnalysis ====
plotPca(deseq)
#> Ignoring unknown labels:
#> • fill : "sampleName"