Export data from R

Usage

export(object, con, ...)

# S4 method for class 'DESeqAnalysis,character'
export(object, con, compress = FALSE, overwrite = TRUE, quiet = FALSE)

# S4 method for class 'DESeqDataSet,character'
export(object, con, compress = FALSE, overwrite = TRUE, quiet = FALSE)

Arguments

object: Object.
con: character(1). Directory path.
compress: logical(1). Apply gzip compression to all files.
overwrite: logical(1). Overwrite existing file on disk.
quiet: logical(1). Perform command quietly, suppressing messages.
...: Additional arguments.

Value

Invisible character or list of file paths.

Details

Size-factor normalized coutns and FPKM values are calculated on the fly and exported automatically.

Note

Updated 2022-09-13.

Examples

data(deseq)

## DESeqAnalysis ====
con <- AcidBase::tempdir2()
#> Error in vapply(X = X, FUN = FUN, FUN.VALUE = logical(1L), ..., USE.NAMES = useNames): formal argument "USE.NAMES" matched by multiple actual arguments
x <- export(deseq, con = con)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'con' in selecting a method for function 'export': object 'con' not found
print(x)
#> Error: object 'x' not found
AcidBase::unlink2(con)
#> Error: object 'con' not found