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Version 0.7

DESeqAnalysis 0.7.0 (2023-10-04)

Minor changes:

  • Removed dependency on stringi package, in favor of strMatch from AcidBase.
  • export: Reworked methods to use AcidGenerics convention instead of BiocIO.
  • Now enforcing strict camel case for all function names.
  • Renamed plotDEGHeatmap to plotDegHeatmap.
  • Renamed plotDEGPCA to plotDegPca.
  • Renamed plotDEGStackedBar to plotDegStackedBar.
  • Renamed plotDEGUpset to plotDegUpset.
  • Renamed plotLFC to plotLfc.
  • Renamed plotMA to plotMa. Now using AcidGenerics instead of BiocGenerics.
  • Renamed plotPCA to plotPca. Now using AcidGenerics instead of BiocGenerics.

DESeqAnalysis 0.7.1 (2024-03-27)

Minor changes:

  • Updated dependencies to Bioconductor 3.18.
  • Ensured that validObject calls are enclosed within assert.
  • Relaxed validObject assert checks on legacy DESeqResults methods.
  • Resaved minimal example objects for unit tests.
  • Improved lfcShrinkType for legacy DESeqResults objects.

DESeqAnalysis 0.7.2 (2025-03-24)

Minor changes:

  • Decreased R dependency from 4.3 to 4.0.

DESeqAnalysis 0.7.3 (2026-06-19)

License changes:

  • Relicensed from AGPL-3 to Apache 2.0.

Minor changes:

  • Modernized tooling: removed per-package .lintr in favour of global ~/.lintr; added air.toml; migrated to roxygen2 8.0.