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Version 0.16

basejump 0.16.0 (2022-05-06)

Major changes:

  • R 4.2 / Bioconductor 3.15 is now required.
  • Reduced the number of packages imported: grDevices, grid, utils.
  • No longer reexporting S4 classes or coercion methods.
  • Removed AcidCLI as a core package, as this shouldn’t really be used in basic analysis scripts.
  • Removed dependencies on data.table and tibble.

Minor changes:

  • Now exporting droplevels2, to avoid method collisions with changes in DataFrame class handling introduced in Bioconductor 3.15.
  • Updated dependencies on AcidExperiment, AcidGenomes, AcidSingleCell, and pipette, to resolve breaking changes introduced by Bioconductor 3.15.
  • Reworked data.table and tibble reexports, which are no longer defined in pipette package.

basejump 0.16.1 (2022-10-25)

Minor changes:

  • Hardened dependency version cutoffs.
  • Added lintr exclusions for magrittr imports.
  • Updated roxygen2 documentation.

basejump 0.16.2 (2023-01-30)

Minor changes:

  • Updated package dependencies, now requiring Bioconductor 3.16.
  • minorVersion has been removed in favor of majorMinorVersion.
  • Now including euclidean and zscore as reexports from AcidGenerics. Methods for these are primarily defined in AcidBase.

basejump 0.16.3 (2023-02-07)

Minor changes:

  • Removed requireNamespaces from reexports, as this function will be migrated from AcidBase to goalie in a pending update.

basejump 0.16.4 (2023-02-09)

Minor changes:

  • Removed mapToDataFrame from NAMESPACE, which will be made defunct in a pending update to AcidPlyr and AcidGenerics packages. We recommend using rbindToDataFrame instead.

basejump 0.16.5 (2023-04-27)

Minor changes:

  • Updated NAMESPACE for compatibility with Bioconductor 3.17.
  • Updated version pinnings on Acid Genomics dependencies.