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Version 0.15

basejump 0.15.0 (2022-03-11)

Major changes:

  • Reverted back to reexporting all useful magrittr pipes, for convenience.
  • Migrated some single-cell RNA-seq functions from pipette to AcidSingleCell, which are now reexported here in basejump. These include: CellCycleMarkers, CellTypeMarkers, importCellCycleMarkers, importCellTypeMarkers.
  • Reexporting new classes now defined in AcidSingleCell (previously in pointillism): CellCycleMarkers, CellTypeMarkers, KnownMarkers.

Minor changes:

  • Removed from reexports: compressExtPattern, extPattern (removed from AcideBase; refer to goalie), and localOrRemoteFile (removed from pipette).
  • Now reexporting GenomicRanges, GenomicRangesList, IntegerRanges virtual classes, instead of GRanges, GRangesList, IRanges, respectively. Downstream S4 methods should be declared against these virtual classes, and never against DFrame directly (use DataFrame virtual class), for example.
  • Updated supported S4 coercion methods via as from pipette package.