Version 0.4

AcidSingleCell 0.4.0 (2023-10-04)

Major changes:

• Now enforcing strict camel case in all function names.
• Renamed convertSampleIDsToNames to convertSampleIdsToNames.

Minor changes:

• Updated unit tests to reflect changes in AcidTest package update.

AcidSingleCell 0.4.1 (2023-10-27)

Minor changes:

• Migrated indropsSampleIndexCounts from koopa R package here.
• Updated some internal leftJoin steps to ensure we don’t type switch.

AcidSingleCell 0.4.2 (2024-03-27)

Minor changes:

• importCellCycleMarkers, importCellTypeMarkers: reworked internal code to no longer use makeGeneToSymbolFromEnsembl, which is slated to be removed in the next AcidGenomes package update. Instead it is recommended to use makeGRangesFromEnsembl to generate a GRanges object first, and then generate GeneToSymbol in a secondary call.
• Added code coverage for CellCycleMarkers and CellTypeMarkers generators.
• Improved factor handling in CellCycleMarkers and CellTypeMarkers output.

AcidSingleCell 0.4.3 (2025-03-24)

Minor changes:

• Decreased R dependency from 4.3 to 4.0.

AcidSingleCell 0.4.4 (2025-04-12)

Minor changes

• barcodeRanksPerSample: Updated assert check to no longer require "fitted" column, which was removed in DropletUtils 1.27 update.

AcidSingleCell 0.4.5 (2026-06-19)

License changes:

• Relicensed from AGPL-3 to Apache 2.0.

Minor changes:

• Modernized tooling: removed per-package .lintr in favour of global ~/.lintr; added air.toml; migrated to roxygen2 8.0.