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Version 0.3

AcidPlots 0.3.0 (2020-10-07)

  • Renamed package from acidplots to AcidPlots.

AcidPlots 0.3.1 (2021-02-09)

New functions:

  • plotCorrelation: Quick X-Y correlation scatterplot that calculates the R2 value, similar to plots in GraphPad Prism.

Minor changes:

  • plotWaterfall: Reworked internal code to better handle splitting out of interesting groups into separate plots.
  • Added initial SummarizedExperiment method support to plotWaterfall.
  • Bug fixes to avoid issues with hard-coding sampleID internally as sample identifier column, helping improve migrate to sampleId as preferred method.
  • Package no longer attaches basejump.

AcidPlots 0.3.2 (2021-02-10)

Minor changes:

  • Including some reexports that are used in DESeqAnalysis: draw_plot, ggdraw, log_breaks, plot_grid, and pretty_breaks.

AcidPlots 0.3.3 (2021-02-16)

Minor changes:

  • Reexporting rlang functions that allow for standard evaluation within ggplot object creation: !!, !!!, sym, and syms.
  • Removed need to use Matrix::colSums internally. Just inherit from the regular S4 generic.

AcidPlots 0.3.4 (2021-03-02)

Minor changes:

  • Ensure we reexport percent from scales, which is used in pointillism.

AcidPlots 0.3.5 (2021-03-12)

Minor changes:

  • Removed unnecessary stringr dependency, since these functions are now reexported inside basejump.

AcidPlots 0.3.6 (2021-05-17)

Major changes:

  • plotCorrelation: Updated data.frame method to support labelCol, which is useful for defining the column to use for plot labels.
  • plotCorrelation: The trans now defaults to “log10”, instead of “identity”. This is recommended for IC50 plots, which are the intended use of this function the majority of the time.

Minor changes:

  • Updated dependencies to latest versions available on conda.
  • Removed RColorBrewer and matrixStats as dependencies.

AcidPlots 0.3.7 (2021-06-29)

Minor changes:

  • Documentation improvements. In particular, split out documentation for our customized ggplot2 layer functions, which were previously documented (albeit in a somewhat confusing manner) in geoms.Rd file.
  • Updated basejump and plotting dependency packages.
  • Updated internal guides() handling to use character string instead of logical (e.g. FALSE), which was changed in ggplot 3.3.5+.

AcidPlots 0.3.8 (2021-07-27)

Minor changes:

  • acid_geom_label_repel: Now setting max.overlaps = Inf internally, to ensure that all points are always labeled. Refer to ggrepel examples documentation for details on max.overlaps argument, and the override option ggrepel.max.overlaps, which works globally in an R session.

AcidPlots 0.3.9 (2021-08-09)

Minor changes:

  • matchLabels: Now allowing input of logical(1), so we can better support dynamic automatic plot labels.