Version 0.1

AcidMarkdown 0.1.0 (2021-02-04)

Initial release, migrating code previously defined in basejump.

AcidMarkdown 0.1.1 (2021-03-04)

Minor changes:

• Fixed typo in _setup.R file, which should be “AcidPlots” instead of “acidplots”.

AcidMarkdown 0.1.2 (2021-07-20)

Minor changes:

• Removed usage of magrittr pipe %>% in _footer.Rmd template file. Switched from readr::read_lines to pipette::import for source code lines import instead.
• Removed dependency on stringr package by removing str_dup in favor of using base R rep method instead.

AcidMarkdown 0.1.3 (2021-09-08)

Minor changes:

• Updated basejump dependencies.
• Removed documentation reference to cowplot plot_grid function. Now recommending usage of patchwork package instead.

AcidMarkdown 0.1.4 (2021-09-09)

Major changes:

• Now setting default ggplot2 colors in _setup.R file.

AcidMarkdown 0.1.5 (2021-12-15)

Minor changes:

• Disabling ggplot custom color and fill palette overrides in _setup.R include file until we push a new version of the AcidPlots package. Currently causing bcbioRNASeq quality control R Markdown template to fail.
• Updated and reorganized references defined bibliography.bib file. Had to rework ggplot2 reference, as this was observed to cause pandoc 2.16 to fail. Note that pandoc 2.14, the version bundled with RStudio, at least on macOS, does not have this rendering issue, which is why it was difficult to catch.

AcidMarkdown 0.1.6 (2022-03-11)

Minor changes:

• Added useful commented code into default _setup.R file for R Markdown.
• Updated website to use bootstrap 5 template.