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Version 0.4

acidgsea 0.4.0 (2020-09-26)

Major changes:

  • FGSEAList: Reworked primary method to use DESeqAnalysis instead of RankedList as input. The RankedList object is now calculated automatically internally.
  • Now slotting gene sets inside the FGSEAList object.
  • gmtFiles argument has been renamed to geneSetFiles.

New functions:

  • geneSetResults: Extract gene set expression values (from DESeqResults).
  • leadingEdge: New accessor that returns leading edge genes from GSEA run.
  • results: Extract GSEA results from object (from fgsea return).