Import RNAcentral identifier mappings

Import RNAcentral identifier mappings

Usage

mapRnacentral(organism, database)

Arguments

organism

character(1). Full Latin organism name (e.g. "Homo sapiens").

database

character(1). Database name. Currently supported: "Ensembl", "GENCODE", "HGNC", "MGI", and "RefSeq". HGNC database is Homo sapiens specific, and MGI is Mus musculus specific.

Value

DFrame. Contains RNAcentral to specified database RNA transcript identifier mappings. Returns "rnacentralId", "database", "txId", "taxId", "txBiotype", and "geneId" columns.

Note

Updated 2023-12-13.

See also

• https://rnacentral.org/

• https://ftp.ebi.ac.uk/pub/databases/RNAcentral/

Examples

## Get RNAcentral to RefSeq identifier mappings.
## > object <- mapRnacentral(organism = "Homo sapiens", database = "refseq")
## > print(object)