Returns a named character vector (or list when multiple OMIM IDs exist per
gene) mapping Ensembl gene IDs or HGNC gene names to OMIM identifiers,
using HGNC curated data.
Usage
mapGenesToOmim(genes, hgnc = NULL)
Arguments
- genes
character.
Human gene names (symbols) or Ensembl gene IDs.
- hgnc
Hgnc or NULL.
If NULL, HGNC annotations will be downloaded automatically.
Value
Named list of character vectors.
Each element contains OMIM identifiers for the corresponding gene.
Genes with no OMIM mapping return NA_character_.
Examples
x <- mapGenesToOmim(genes = c("NFE2L2", "BRCA1", "TP53"))
#> → Importing HGNC complete set.
#> Error in vapply(X = X, FUN = FUN, FUN.VALUE = logical(1L), ..., USE.NAMES = useNames): formal argument "USE.NAMES" matched by multiple actual arguments
print(x)
#> Error: object 'x' not found