NCBI-to-Ensembl gene identifier mappings

Usage

NcbiToEnsembl(object, ...)

# S4 method for class 'Hgnc'
NcbiToEnsembl(object)

# S4 method for class 'Mgi'
NcbiToEnsembl(object)

# S4 method for class 'integer'
NcbiToEnsembl(object, organism)

Arguments

object: Object.
organism: character(1). Full Latin organism name (e.g. "Homo sapiens").
...: Additional arguments.

Value

NcbiToEnsembl.

Note

Updated 2023-11-28.

Examples

## integer ====
x <- NcbiToEnsembl(object = c(2L, 1L), organism = "Homo sapiens")
#> → Matching 2 identifiers against HGNC database.
#> → Importing HGNC complete set.
#> → Importing /private/var/folders/pt/1g5629f1699dfjwdfh32q50m0000gn/T/koopa-r-docs-build-l3dklp41/home/.cache/R/AcidGenomes/BiocFileCache/a36529a1d43e_hgnc_complete_set.txt using base::`read.table()`.
#> Error in stop(simpleError(message = msg, call = if (p) {    sys.call(p)})): Assert failure.
#> [1] areSetEqual(names(expected), names(object)) is not TRUE.
#> Cause: `character` and `character` have different numbers of elements (52
#> versus 51).
print(x)
#> Error: object 'x' not found