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Import human-to-mouse gene mappings from the Jackson Laboratory (JAX) Mouse Genome Informatics (MGI) website

Source: R/JaxHumanToMouse.R
JaxHumanToMouse.Rd

Import human-to-mouse gene mappings from the Jackson Laboratory (JAX) Mouse Genome Informatics (MGI) website

Usage

JaxHumanToMouse(unique = TRUE)

Arguments

unique

logical(1). Only return unique 1:1 mappings between human and mouse. Recommended by default.

Value

JaxHumanToMouse.

Note

Updated 2023-10-12.

See also

  • https://www.informatics.jax.org/

  • https://www.biostars.org/p/9567892/

Examples

object <- JaxHumanToMouse()
#> → Caching URL at <https://www.informatics.jax.org/downloads/reports/HOM_MouseHumanSequence.rpt> into /private/var/folders/pt/1g5629f1699dfjwdfh32q50m0000gn/T/koopa-r-docs-build-l3dklp41/home/.cache/R/AcidGenomes/BiocFileCache.
#> 
#> → Importing /private/var/folders/pt/1g5629f1699dfjwdfh32q50m0000gn/T/koopa-r-docs-build-l3dklp41/home/.cache/R/AcidGenomes/BiocFileCache/a3656e2d3ce9_HOM_MouseHumanSequence.rpt using base::`read.table()`.
print(object)
#> JaxHumanToMouse with 17091 rows and 8 columns
#>       dbClassKey humanGeneName humanHgncId humanNcbiGeneId humanOmimGeneId
#>        <integer>   <character>   <integer>       <integer>       <integer>
#> 1       52140945          A1BG           5               1          138670
#> 2       52125174          A1CF       24086           29974          618199
#> 3       52140946           A2M           7               2          103950
#> 4       52140947       A3GALT2       30005          127550          619850
#> 5       52140948        A4GALT       18149           53947          607922
#> ...          ...           ...         ...             ...             ...
#> 17087   52133895        ZYG11A       32058          440590          618675
#> 17088   52133894        ZYG11B       25820           79699          618673
#> 17089   52138531           ZYX       13200            7791          602002
#> 17090   52135734         ZZEF1       29027           23140          619459
#> 17091   52130310          ZZZ3       24523           26009          619892
#>       mouseGeneName mouseMgiId mouseNcbiGeneId
#>         <character>  <integer>       <integer>
#> 1              A1bg    2152878          117586
#> 2              A1cf    1917115           69865
#> 3               A2m    2449119          232345
#> 4           A3galt2    2685279          215493
#> 5            A4galt    3512453          239559
#> ...             ...        ...             ...
#> 17087        Zyg11a    2446208          230590
#> 17088        Zyg11b    2685277          414872
#> 17089           Zyx     103072           22793
#> 17090         Zzef1    2444286          195018
#> 17091          Zzz3    1920453          108946