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Version 0.5

AcidExperiment 0.5.0 (2023-10-04)

Major changes:

  • Starting a new release series, based on breaking changes in other Acid Genomics dependency packages.
  • Now enforcing strict camel case for all function names.
  • Replaced usage of "2" with "To" in relevant generics.
  • export: Updated method to use AcidGenerics conventions rather than BiocIO.
  • Replaced usage of stringi with AcidBase variants.

Minor changes:

  • AcidExperimentTestsUrl: No longer uses specific version.

AcidExperiment 0.5.1 (2023-10-05)

Minor changes:

  • convertSampleIdsToNames: Quiet down this function when no sample name conversion is necessary.

AcidExperiment 0.5.2 (2023-10-05)

Minor changes:

  • Removed export method for MultiAssayExperiment, which has migrated to cBioPortalAnalysis package instead. The MultiAssayExperiment package introduces too many unwanted dependencies.

AcidExperiment 0.5.3 (2023-10-27)

Minor changes:

  • melt: Needed to ensure that join column is factor, to avoid unwanted type switch during leftJoin step.

AcidExperiment 0.5.4 (2023-12-01)

Minor changes:

  • EnsemblToEntrez: Updated unit test to reflect breaking change in pending AcidGenomes package update.

AcidExperiment 0.5.5 (2025-03-24)

Minor changes:

  • Relaxed R dependency from 4.3 to 4.0.

AcidExperiment 0.5.6 (2026-06-19)

License changes:

  • Relicensed from AGPL-3 to Apache 2.0.

Minor changes:

  • Modernized tooling: removed per-package .lintr in favour of global ~/.lintr; added air.toml; migrated to roxygen2 8.0.